2025
January 2025
- Creating a Nextflow pipeline for gene count analysis • Steve Yost • January 6, 2025
2024
December 2024
- Using ChatGPT to explore thermal resilience based on gene counts • Steve Yost • December 31, 2024
- PCA for gene count comparison between NCBI Crassostrea gigas Annotation Release 101 and GCF_963853765.1-RS_2024_06 reference genomes • Steve Yost • December 23, 2024
- Compare genes after CGI id conversion attempt 1 • Shelly Wanamaker • December 13, 2024
- Exploring nf-core differential abundance workflow • Emma Strand • December 11, 2024
- Re-run FetchNGS for Cvirg_Perkinsus_RNAseq • Shelly Wanamaker • December 5, 2024
- Repoint nf-core projectDir to srlab directory • Shelly Wanamaker • December 3, 2024
November 2024
- Run methylseq on Klone • Shelly Wanamaker • November 27, 2024
- Run Seqera rnaseq pipeline for C. gigas study • Steve Yost • November 24, 2024
- Run Seqera fetchngs pipeline for C. gigas study • Steve Yost • November 24, 2024
- AWS Batch compute environment on Seqera • Steve Yost • November 23, 2024
- Run RNAseq on perkinsus datasets • Emma Strand • November 11, 2024
- Run RNAseq on perkinsus datasets • Shelly Wanamaker • November 4, 2024
- Run denovotranscript on Klone attempt 3 • Shelly Wanamaker • November 4, 2024
October 2024
- Run denovotranscript on Klone attempt 2 • Shelly Wanamaker • October 9, 2024
- UW bioinformatic resources and project set-up • Emma Strand • October 9, 2024
- Running RNAseq pipeline with reference transcript for C.Gigas Dataset • Emma Strand • October 9, 2024
September 2024
- Run denovotranscript on Klone • September 25, 2024
- Sept. 25, 2024 Set up nextflow on UW Klone and run fetchngs • September 25, 2024
- RNAseq workflow with de novo transcriptome assembly • September 11, 2024
- RNASeq workflow with reference genome • Emma Strand • September 10, 2024
- SW-ES Meeting Summaries • Emma Strand • September 4, 2024
- Welcome! • September 3, 2024