Analysis Notebook

browse by category or date or tag

Run ceasmallr (C. virginica) WGBS data through nf-core methylseq pipeline

Posted on May 2, 2025 Written by: Shelly Wanamaker

Data needed: [Read More]

Tags: methylseq nf-core WGBS ceasmallr virginica

Reprocess TAG-seq data with different FastP parameters

Posted on April 15, 2025 Written by: Shelly Wanamaker

This post is related to github issues # 26 and # 28 [Read More]

Tags: TAG-seq RNA-seq fastp adapter

Reproduce Oyster WGBS analysis with nf-core methylseq

Posted on April 7, 2025 Written by: Shelly Wanamaker

Background [Read More]

Tags: methylseq WGBS params klone

Generic run with nf-core FetchNGS

Posted on April 4, 2025 Written by: Shelly Wanamaker

code from 03-27-25 [Read More]

Tags: TAG-seq RNA-seq fastp adapter

Creating a Nextflow pipeline for gene count analysis

Posted on January 6, 2025 Written by: Steve Yost

Motivation Given the interesting results found during the previously posted ChatGPT work, there was some sentiment that the python script that I had consolidated from that session might be reusable if it were generalized. I used this as an opportunity to explore creating a NextFlow pipeline, taking that python script... [Read More]

Tags: NextFlow