Overview Following the work described in previous two notebook entries, we narrowed the set of studies to two of the five that had the most similar experimental design, being that they worked with samples that were labeled as tolerant/resistant or sensitive/susceptible (noting the difference in focus indicated by those terms)....
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Exploring six-gene biomarker across studies
Abstract
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Series of DESeq2 runs indicates innate DEGs for tolerance
Abstract
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Two-Script Pipeline for Gene-Expression Classifier
Preface This notebook entry is largely generated by ChatGPT based on the scripts that resulted from a long and successful ChatGPT session. I’ve added links to data files. The work was motivated by previous exploratory work that involved running nf-core/differentialabundance on labeled data from Study1 (referred to as ‘A’ here),...
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Step-wise differential abundance with Cvirg dataset1
Purpose
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