Analysis Notebook

Run denovotranscript on Klone attempt 2

Posted on October 9, 2024 Written by: Shelly Wanamaker

The 9/25/24 attempt failed [Read More]

Tags: nextflow Klone denovotranscript

UW bioinformatic resources and project set-up

Posted on October 9, 2024 Written by: Emma Strand

Project Set-up [Read More]

Tags: project-setup HPC-server UW-resources

Running RNAseq pipeline with reference transcript for C.Gigas Dataset

Posted on October 9, 2024 Written by: Emma Strand

RNASeq workflow for C.Gigas Dataset #1 [Read More]

Tags: RNAseq nextflow Klone referencetranscript Cgigas

Run denovotranscript on Klone

Posted on September 25, 2024

This entry describes running denovotranscript on the UW HPC Klone server. I generally followed the example workflow provided in the denovotranscript usage documentation. [Read More]

Tags: nextflow Klone denovotranscript

Sept. 25, 2024 Set up nextflow on UW Klone and run fetchngs

Posted on September 25, 2024

This entry describes how I set up nextflow on the UW HPC Klone server and got fetchngs to run successfully [Read More]

Tags: nextflow Klone fetchngs