Analysis Notebook

Run RNAseq on perkinsus datasets

Posted on November 4, 2024 Written by: Shelly Wanamaker

This is a meta analysis of 4 RNAseq datasets each comparing different oysters infected with Perkinsus marinus. [Read More]

Tags: nextflow Klone RNAseq

Posted on November 4, 2024 Written by: Shelly Wanamaker

ran on 11-04-2024 ``` salloc -A srlab -p cpu-g2-mem2x -N 1 -c 1 –mem=100GB –time=2-12:00:00 [Read More]

Tags: nextflow Klone denovotranscript

Posted on October 9, 2024 Written by: Shelly Wanamaker

The 9/25/24 attempt failed [Read More]

Tags: nextflow Klone denovotranscript

Posted on October 9, 2024 Written by: Emma Strand

Project Set-up [Read More]

Tags: project-setup HPC-server UW-resources

Posted on October 9, 2024 Written by: Emma Strand

RNASeq workflow for C.Gigas Dataset #1 [Read More]

Tags: RNAseq nextflow Klone referencetranscript Cgigas