Analysis Notebook

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Run denovotranscript on Klone attempt 3

Posted on November 4, 2024 Written by: Shelly Wanamaker

ran on 11-04-2024 ``` salloc -A srlab -p cpu-g2-mem2x -N 1 -c 1 –mem=100GB –time=2-12:00:00 [Read More]

Tags: nextflow Klone denovotranscript

Run denovotranscript on Klone attempt 2

Posted on October 9, 2024 Written by: Shelly Wanamaker

The 9/25/24 attempt failed [Read More]

Tags: nextflow Klone denovotranscript

UW bioinformatic resources and project set-up

Posted on October 9, 2024 Written by: Emma Strand

Project Set-up [Read More]

Tags: project-setup HPC-server UW-resources

Running RNAseq pipeline with reference transcript for C.Gigas Dataset

Posted on October 9, 2024 Written by: Emma Strand

RNASeq workflow for C.Gigas Dataset #1 [Read More]

Tags: RNAseq nextflow Klone referencetranscript Cgigas

Run denovotranscript on Klone

Posted on September 25, 2024

This entry describes running denovotranscript on the UW HPC Klone server. I generally followed the example workflow provided in the denovotranscript usage documentation. [Read More]

Tags: nextflow Klone denovotranscript