RNASeq workflow for C.Gigas Dataset #1
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Run denovotranscript on Klone
This entry describes running denovotranscript on the UW HPC Klone server. I generally followed the example workflow provided in the denovotranscript usage documentation.
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Sept. 25, 2024 Set up nextflow on UW Klone and run fetchngs
This entry describes how I set up nextflow on the UW HPC Klone server and got fetchngs to run successfully
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RNAseq workflow with de novo transcriptome assembly
This is a description of the nf-core/denovotranscript pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq.
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RNASeq workflow with reference genome
RNASeq workflow construction with reference genome
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